Service list

Performs haplotype assembly from long gapless reads.

A specialized and medically-oriented database of published variations observed within the internal ribosome entry site (IRES) variants in hepatitis C virus.

Enables you to set up and train models for ab initio prediction of gene structure. That is, to perform "gene calling" and identify which base pairs in a genome belong to the UTR/CDS/Intron of genes.

Under Development in collaboration with SURFsara and Lygature, based on prior experience deploying tools for end users / life scientists.

Human Endogenous RetroViruses Database.

HUGO Gene Nomenclature Committee, responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication.

HilbertCurve is an R package which generates 2D Hilbert curves for genomic and other data

A web tool for the interpretation of the consequences of the combined changes of gene expression levels and/or genomic mutations in the context of signalling pathways. 

The HLA Ligand Atlas is a comprehensive collection of tissue and HLA allele specific HLA ligands that are naturally presented. The data was generated in standardized mass spectrometry experiments and analyzed using our reproducible computational analysis workflow. (Data analysed with the OpenMS MHCquant workflow) 

Estimation of transmembrane regions based on amino acid sequence

Database of human mitochondrial genomes from primary INSDC databases, personal submissions and application of MtoolBox to NGS data.

Web server for identification of hot spots in protein engineering.

Tier-0 HPC system Marconi and Tier-1 Galileo100 INFN HPC clusters ENEA CRESCO "HPC service”

Fast-track HPC access for medium sized biological data analysis projects (50K core hours).

Human transmembrane proteome database

A collection of web resources for working with proteins, drug reactions, gene expression analysis, proteome profiling and assessing MinION Data, including: 

• DeSeq2 - an R/Bioconductor package for differential expression analysis of high-throughput sequencing assays
• DexSeq - an extension of DESeq for the analysis of alternative exon usage.
• EBImage - R/Bioconductor package that provides general purpose functionality for the reading, writing, processing and analysis of images.
• SMART - a web resource providing simple identification and extensive annotation of protein domains via sequence homology searches.
• SIDER - a web-based resource that contains information on marketed medicines and their recorded adverse drug reactions.

Database with millions of high-resolution images.

A population-based database that collects all the cases with malignancies in Hungary by reports of oncology care hospitals. Registration is mandatory. The Registry is regulated by the order of the Hungarian Government and maintained by the  National Institute of Oncology.

HyPPI classifies a protein-protein complex concerning its interaction type into a permanent, transient or crystal artifact. 

Predicts protein stability changes upon single point mutation from protein structure or protein sequence.

Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain.

An ontology for IDP community: it enables the annotation of structural and functional properties of intrinsically disordered proteins and their interaction partners.

Integrated Database of Small Molecules.
Aggregating many different sources of information about small molecules into a single, logically coherent and semantically interconnected information source.

Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to commonly used alternatives for false discovery rate (FDR) control by assigning data-driven weights to each hypothesis. The IHW software package provide a mechanism that allows the methodology to be applied to many different data types.

An integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), and major histocompatibility (MH) of human and other vertebrate species. 

Web tool to study the flexibility of nucleic acids, either isolated or bound to other molecules. The server offers a variety of methods to explore nucleic acid flexibility, from coarse-grained low resolution mesoscopic models to atomistic molecular dynamics simulations.

Interaction Network GO Annotator is a web server for the prediction of protein function.

Prediction of protein stability change upon single-point variations from protein sequence and structure

IntAct provides a freely available, open source database system and analysis tools for molecular interaction data.

IntOGen collects and analyses somatic mutations in thousands of tumor genomes to identify cancer driver genes.