Service list

The European Genome-phenome Archive (EGA) allows users to explore datasets from numerous genotype experiments, including case-control, population and family studies, that are supplied by a range of data providers. 

Europe PubMedCentral (EuropePMC) contains over 3 million full text life science research articles, of which over 900 000 are open access, and combines these with 30 million abstracts from PubMed and other sources. 

European Variation Archive

eggNOG is a database of nested orthologous gene groups (NOGs) infered using unsupervised clustering applied to >2,000 complete genomes followed by comprehensive characterization and analysis of the resulting gene families. eggNOG provides orthologous group assignments at >100 different taxonomic levels as well as multiple sequence alignments, maximum-likelihood trees and broad functional annotations for each group accessible via a web interface or through bulk download. Part of the Microbiome Analysis Toolbox.

Allows the easy comparison of publicly available data from the main Protein-Protein Interaction (PPI) databases for the same and distinct species.

SIB's resource portal with access to all major tools and databases provided by different SIB groups and external partners. Specific query features allow interacting with many resources at the same time. 

The Expression Atlas allows users to search for gene expression changes measured in various cell types, organism parts, and disease states. It represents a curated subset of the ArrayExpress and GEO Archive experiments.

FAIDARE is a portal developed by ELIXIR-FR as an asset of the ELIXIR Plant Science community. FAIDARE enables data discovery through federations of distant Plant informations systems that have set up a standardized Restful API, the BrAPI. FAIDARE currently allows to do detailed searches of accessions and phenotyping data.

Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help the research communities to make and keep data Findable, Accessible, Interoperable and Reusable (FAIR). The FAIR Cookbook guides researchers and data stewards of the Life Science domain in their FAIRification journey and provides policy makers and trainers with practical examples to recommend in their guidance and use in their educational material. As a UK-LU joint Node Service, we will continue the development the FAIR Cookbook as well as collaborate towards its sustainability.

This is a joint Node Service between ELIXIR Luxembourg and ELIXIR UK.

Data publication technology/tooling based on Linked Data, with associated data management processes. See the FAIR data tools.

FAIR-Checker is a generic tool built on semantic web W3C standards and technologies that aims at assessing the alignement to FAIR principles of web resources, in line with the GO-FAIR and RDA FAIR data maturity model.

The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets, models or simulations, processes and research outcomes. 

Open source web platform for sharing scientific research assets, models, processes and outcomes. Offering the FAIRDOMHub instance, as well as the SEEK software for own installations. Associated tooling and training.

An information and educational resource of inter-related data standards, databases and policies. 

FAIRtracks is a set of JSON Schemas defining a draft minimal standard used to consolidate genomic track metadata from various sources, which can be queried by downstream clients through the TrackFind webtool/API.

This API allows validating JSON contents following JSON Schema defined at https://github.com/fairtracks/fairtracks_standard/

A visualization tool for positional annotations on a sequence

Federated service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects

A worldwide database documenting the prevalence of clinically relevant genome variation allele frequencies in populations worldwide

FireProt is a web server for an automated design of thermostable mutants. The design of thermostable mutants is based on the integration of structural and evolutionary information obtained from several bioinformatics databases and computational tools.

FireProt-ASR is a web server for an automated calculation of ancestral sequences. Fireprot-ASR allows you to perform ancestral sequence reconstruction starting from a single protein sequence. The pipeline first compiles a dataset of catalytically similar protein sequences, aligns them, construct their phylogenetic tree, and then reconstruct ancestral nodes. It also allows user to input their own data and start from a different point in the pipeline.

FireProtDB is a comprehensive, manually curated database of the protein stability data for single-point mutants. Proteins find their use in numerous biomedical and biotechnological applications. Naturally occurring proteins usually cannot withstand harsh industrial environments since they have evolved to function under mild conditions. Increasing protein stability is one of the key determinants of protein applicability. The predictive power of the current computational tools is compromised by the limited experimental data that would allow a rigorous training and testing.

OpenMS tool for Top-Down MS data deconvolution.

FLASHIda is an intelligent online data acquisition algorithm for top-down proteomics (TDP) that ensures the real-time selection of high-quality precursors of diverse proteoforms. 

FLASHQuant performs MS1-level label-free quantification data analysis in top-down proteomics, with an automatic overlapping signal resolution method.

Database and web portal for genetic and genomic information on fruit fly Drosophila melanogaster and related fly species.

A web server for assigning putative cis DNA motifs to input transcription factors (TFs) and conversely for predicting which TFs that might recognize input DNA motifs. 

An online access to a series of RNA research tools for sequence-structure alignments, clustering, interaction prediction, identification of homologs etc

Web application for the integrative and combined analysis and visualization of multi-level omics data. (Replaced ProMeTra)

g:Profiler is a bioinformatics toolkit for characterising and manipulating gene lists of high-throughput genomic data.