Benefits of working together services

Name Description ELIXIR Node
Performance benchmarking and technical monitoring

This study will support OpenEBench in the goal to become an observatory of bioinformatics software quality regarding openness including: 

  • ELIXIR AAI
  • software development and containerization best-practices
  • FAIR data principles for reference datasets as well as the principles on Open Data, Open Source and Open Science.

WP1. A Core Benchmarking Service: 

Work Package 1 has the following aims:

  • To establish, consolidate and extend the core ELIXIR Service for benchmarking
  • To lower the benchmarking startup hurdle
  • To provide basic tests of tool operability
  • To alleviate reimplementation of abstractable workflows

Through four subtasks: 

  1. Execution environment for benchmarking workflows
  2. Automated data import
  3. Scientific benchmarking test case
  4. Extend visualization gallery
 ELIXIR Czech Republic, ELIXIR Italy, ELIXIR Norway, ELIXIR Spain, ELIXIR Switzerland
Performance benchmarking and technical monitoring

This study will support OpenEBench in the goal to become an observatory of bioinformatics software quality regarding openness including: 

  • ELIXIR AAI
  • software development and containerization best-practices
  • FAIR data principles for reference datasets as well as the principles on Open Data, Open Source and Open Science.

WP1. A Core Benchmarking Service: 

Work Package 1 has the following aims:

  • To establish, consolidate and extend the core ELIXIR Service for benchmarking
  • To lower the benchmarking startup hurdle
  • To provide basic tests of tool operability
  • To alleviate reimplementation of abstractable workflows

Through four subtasks: 

  1. Execution environment for benchmarking workflows
  2. Automated data import
  3. Scientific benchmarking test case
  4. Extend visualization gallery
 ELIXIR Czech Republic, ELIXIR Italy, ELIXIR Norway, ELIXIR Spain, ELIXIR Switzerland
Performance benchmarking and technical monitoring

This study will support OpenEBench in the goal to become an observatory of bioinformatics software quality regarding openness including: 

  • ELIXIR AAI
  • software development and containerization best-practices
  • FAIR data principles for reference datasets as well as the principles on Open Data, Open Source and Open Science.

WP1. A Core Benchmarking Service: 

Work Package 1 has the following aims:

  • To establish, consolidate and extend the core ELIXIR Service for benchmarking
  • To lower the benchmarking startup hurdle
  • To provide basic tests of tool operability
  • To alleviate reimplementation of abstractable workflows

Through four subtasks: 

  1. Execution environment for benchmarking workflows
  2. Automated data import
  3. Scientific benchmarking test case
  4. Extend visualization gallery
 ELIXIR Czech Republic, ELIXIR Italy, ELIXIR Norway, ELIXIR Spain, ELIXIR Switzerland
Performance benchmarking and technical monitoring

This study will support OpenEBench in the goal to become an observatory of bioinformatics software quality regarding openness including: 

  • ELIXIR AAI
  • software development and containerization best-practices
  • FAIR data principles for reference datasets as well as the principles on Open Data, Open Source and Open Science.

WP1. A Core Benchmarking Service: 

Work Package 1 has the following aims:

  • To establish, consolidate and extend the core ELIXIR Service for benchmarking
  • To lower the benchmarking startup hurdle
  • To provide basic tests of tool operability
  • To alleviate reimplementation of abstractable workflows

Through four subtasks: 

  1. Execution environment for benchmarking workflows
  2. Automated data import
  3. Scientific benchmarking test case
  4. Extend visualization gallery
 ELIXIR Czech Republic, ELIXIR Italy, ELIXIR Norway, ELIXIR Spain, ELIXIR Switzerland
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg
Single-Cell Omics Network for ELIXIR (SCONE) (2023-24)

This Implementation Study will allow the newly created Single-Cell Omics Community to tackle some of the main challenges identified and achieve the Community's short-term goals described in the white paper.

SCONE will address the need for scalable training by training more trainers and by providing easy access to up-to-date training resources, including lecture videos.

Efficient benchmarking of analysis tools will be achieved by providing curated benchmarking datasets. To effectively address shortfalls in current data/metadata standard paradigms, SCONE will monitor emerging technologies and organise workshops on standard and FAIR data management practices in use across the entire single-cell omics community, with involvement of key stakeholders including those providing standards, tools and data hosting solutions.

The ELIXIR Compute Platform will be kept up to date with the computing requirements of SCO researchers by active information exchange including a workshop.

Events and news

 ELIXIR Finland, ELIXIR Sweden, ELIXIR Germany, ELIXIR Italy, ELIXIR Switzerland, EMBL-EBI, ELIXIR Slovenia, ELIXIR Netherlands, ELIXIR UK, ELIXIR Belgium, ELIXIR Greece, ELIXIR Portugal, ELIXIR Ireland, ELIXIR Israel, ELIXIR Norway, ELIXIR Spain, ELIXIR France, ELIXIR Czech Republic, ELIXIR Luxembourg