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ELIXIR Weekly Brief
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This week's highlights
Submit your workshop ideas for the ELIXIR All Hands Meeting 2022!
Submission deadline 8 December
7 - 10 June 2022 | Amsterdam, Netherlands
We would like to invite you to submit workshop ideas for the upcoming ELIXIR 2022 All Hands meeting; workshops will take place on 7 and 9 June 2022. The abstract submission requirements, and contact details for any queries can be found on the ELIXIR website.
Full details and link to submission
Registration now open for ELIXIR's consultation event on international engagement!
30 November 2021 | 14:00-16:00 CET
Further to our announcement in last week's Weekly Brief, we're pleased to announce that registration is now open for our consultation event in relation to international engagement.
Find out more and register
Lessons learned from organising and hosting a hybrid conference
8 December 2021 | 14:00 CET
In September 2021, the SIB held their bi-annual Basel Computational Biology Conference, [BC]2, together with an ELIXIR Innovation and SME Forum. Due to the ongoing COVID-19 pandemic, they used a hybrid approach. Come along to find out about their experience and tips for hosting hybrid events.
Find out more and register
We're hiring a new Industry Officer
Extended deadline - now tomorrow, 9 November!
We're looking for an enthusiastic new team member to work on maintaining and building our industry strategy.
Find out more and apply
...and a new ELIXIR Communications Officer
Deadline 18 November
We're looking for a communications expert to help build communicate ELIXIR and its activities to key stakeholders.
Find out more and apply
Recommended reads
ELIXIR Software Management Plan for Life Sciences
A BioHackathon Europe output paper
Data Management Plans are now considered a key element of Open Science. They describe the data management life cycle for the data to be collected, processed and/or generated within the lifetime of a particular project or activity. A Software Manag ement Plan (SMP) plays the same role but for software. Although there are a few SMPs already available, most of them require significant technical knowledge to be effectively used. ELIXIR has developed a low-barrier SMP, specifically tailored for life science researchers, aligned to the FAIR Research Software principles.
Read more...
Recommendations for the FAIRification of genomic track metadata
An ELIXIR Implementation study, with funding from ELIXIR-NO, ELIXIR-ES and EMBL-EBI
Many types of data from genomic analyses can be represented as genomic tracks, i.e. features linked to the genomic coordinates of a reference genome. searchers often face difficulties in locating, accessing and combining relevant tracks from external sources [...]. We propose to advance the application of FAIR data principles to produce searchable metadata for genomic tracks. We here provide a first iteration of a draft standard for genomic track metadata, as well as the accompanying software ecosystem.
Read more...
Updates from Focus Groups
Biocuration Focus Group: Help decide the future steering committee
Consultation for feedback on the steering committee nominee is now open. Please send your feedback directly to Sirarat.sarntivijai@elixir-europe.org before midnight of 14 November 2021.
View the list of nominees
The final steering committee will be confirmed on 15 November at our next Biocuration Focus Group meeting.
Add to your calendar (with link to agenda)
Updates from Platforms
Highlights from the 10th GOBLET Annual General Meeting
The GOBLET AGM was held 11-13 October. All presentations were recorded and will be uploaded to the GOBLET Youtube channel shortly. Here are some highlights from the Training Platform:
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Conceptualising the Mastery Rubric for Bioinformatics, a tool for assessing learner development and inform course design. View the slides
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GOBLET 2021 Executive Board Report by Celia van Gelder, GOBLET Chair. View the slides
The ELIXIR Training Platform at Australian Biocommons 2021 Showcase
The collaborative training efforts of the ELIXIR Training Platform and the Australian Biocommons were presented on November 3 at the Showcase event
Updates from Nodes
ELIXIR-NL at the EMBO practical course 'Research to service'
Rob Hooft and Celia van Gelder presented a session related to data management and stewardship at the EMBO Practical Course 'Research to service: Planning and running a bioinformatics core facility'
View the slides
New publication on the EMBL-EBI Complex Portal in collaboration with the Dutch WikiPathways Community
The EMBL-EBI Complex Portal published an update paper in NAR. Members of the Dutch WikiPathways community collaborated with the team to improve the interoperability of complexes in WikiPathways.
Read the paper
A new update for PhylomeDB!
PhylomeDB V5 has been released with a suite of new and exciting features. This public database for complete collections of gene phylogenies (phylomes) is developed and maintained by the Comparative Genomics research group, lead by Toni Gabaldon, which is jointly affiliated to the Barcelona Supercomputing Center (BSC) and the IRB Barcelona, and part of INB/ELIXIR-ES. PhylomeDB is part of the INB/ELIXIR-ES service delivery plan.
Read the new publication
Take a look at the new programme of SIB Training Courses for 2022
Updates from other initiatives
Applications open for the EJPRD Research Mobility Fellowships
The EJP RD Research Mobility Fellowship aims to support PhD students, postdocs and medical doctors in training to undertake scientific visits fostering specialist research training outside their countries of residence. The fellowships cover stays of 4 weeks to 6 months duration.
Find out more
Your help needed! Fill in the RDA's Data Stewardship Survey
The RDA Professionalising Data Stewardship Interest Group (PDS-IG) is seeking input from the research data community to model different approaches to research data stewardship. We would be grateful to hear from any research data stewardship service provider to help us capture the sheer diversity of activities, roles and environments around the world.
Take the survey
Upcoming ELIXIR events & webinars
ELIXIR Training Courses & Webinars
The ELIXIR TeSS portal has a variety of interesting events and courses organised by the ELIXIR Nodes. For more, visit TeSS portal
PerMedCoE webinar: Introduction to qualitative modelling with MaBoSS
18 November 2021 | 15.00 CET
ELIXIR Events and Conferences
BioHackathon Europe 2021
8-12 November 2021 | Hybrid Barcelona, Spain
ELIXIR-CONVERGE workshop series: Getting started with impact evaluation
15 November 2021 | 10:00 CET | Virtual
ELIXIR's Consultation event on international engagement
30 November 2021 | 14:00-16:00 CET | Virtual
ELIXIR-CONVERGE workshop series: Lessons learned from organising and hosting a hybrid conference
8 December 2021 | 14:00 CET | Virtual
ELIXIR All Hands meeting 2022
7 - 10 June 2022 | Amsterdam, Netherlands
Job vacancies
All vacancies are also published on the ELIXIR website (also including those from industry). If you need our help communicating your new open positions, you can submit a job advertisement and it will automatically appear on our newsletters. Go to our vacancy page to submit a job
Outreach Officer - Industry
ELIXIR
ELIXIR Communications Officer
ELIXIR
Senior bioinformatician
Oslo University Hospital
Proteomics Team Coordinator
EMBL-EBI
Postdoctoral fellow (Research Associate)
ELIXIR-Luxembourg / Luxembourg Centre for Systems Biomedicine