Variant analysis with GATK

This course covers the core steps involved in calling variants with the Broad's Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. Please note that CSC hosts 13.-15.6 an international Variant analysis workshop which covers several tools for variant discovery, effect prediction and prioritization, so you might like to combine the two courses.